Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| THCA | rs56051514 | chr3:139269572 | G/A | 4.78E-6 | 487 | 15.9 | 16.87 | 14.53 | KM Plot |
| THCA | rs56057700 | chr9:94704214 | A/AG | 1.6E-5 | 482 | 15.63 | 16.97 | 10.62 | KM Plot |
| THCA | rs56058457 | chr5:96209125 | T/G | 3.31E-6 | 487 | 15.17 | 16.9 | 20.83 | KM Plot |
| THCA | rs56058641 | chr3:139265655 | G/A | 3.37E-5 | 489 | 15.9 | 17.1 | 13.08 | KM Plot |
| THCA | rs56066819 | chr13:24890550 | A/C | 0.000134 | 477 | 15.08 | 17.83 | 17.08 | KM Plot |
| THCA | rs56069641 | chr3:109911652 | G/A | 0 | 490 | 15.65 | 16.53 | 7.08 | KM Plot |
| THCA | rs56122289 | chr10:81746027 | G/A | 0.000149 | 476 | 15.67 | 17.77 | 9.77 | KM Plot |
| THCA | rs56123058 | chr10:81811072 | G/A | 0.000254 | 487 | 16.08 | 15.87 | 11.73 | KM Plot |
| THCA | rs56125087 | chr3:127637870 | G/C | 0 | 490 | 16.27 | 15 | 6.03 | KM Plot |
| THCA | rs56126040 | chr3:56603204 | T/C | 4.35E-6 | 482 | 16.92 | 12.47 | 8.47 | KM Plot |
| THCA | rs56134963 | chr6:151710081 | T/C | 0.000257 | 485 | 15.17 | 18.13 | 17.23 | KM Plot |
| THCA | rs56139334 | chr6:46077847 | C/T | 5.54E-5 | 490 | 15.68 | 16.57 | 17.77 | KM Plot |
| THCA | rs56140719 | chr10:81902245 | C/T | 0.000128 | 483 | 15.97 | 17.5 | 9.77 | KM Plot |
| THCA | rs56149376 | chr10:82002867 | C/T | 8.32E-5 | 481 | 16.08 | 15.83 | 9.77 | KM Plot |
| THCA | rs56163041 | chr1:157017059 | G/C | 2.73E-6 | 481 | 16.8 | 15.17 | 11.3 | KM Plot |